Louis BECQUEY / RNANetLegacy

03 Apr, 2020 1 commit
- using sqlite instead of text files · 95a00b56
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  Louis BECQUEY authored 2020-04-03 07:53:13 +0000
31 Mar, 2020 1 commit
- With stats results · 40cb5b7f
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  Louis BECQUEY authored 2020-03-31 14:05:21 +0000
30 Mar, 2020 2 commits
- Merge branch 'master' of https://github.com/persalteas/RNANet · 36f12c24
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  Louis BECQUEY authored 2020-03-30 13:46:00 +0000
- Statistics over the produced data · f589903e
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  Louis BECQUEY authored 2020-03-30 15:29:09 +0200
28 Mar, 2020 1 commit
- Renamed some descriptors to match the paper · b413f518
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  Louis BECQUEY authored 2020-03-28 12:31:39 +0000
20 Mar, 2020 2 commits
- parallel computation of distance matrices · a6ac991b
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  Louis BECQUEY authored 2020-03-20 16:01:32 +0000
- Distance matrices of 3D data · ee5f1256
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  Louis BECQUEY authored 2020-03-20 16:42:51 +0100
19 Mar, 2020 2 commits
- Merge branch 'master' of https://github.com/persalteas/RNAnet · 220d1a3e
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  Louis BECQUEY authored 2020-03-19 11:52:21 +0100
- Lower RAM usage · 47f8a2ba
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  Louis BECQUEY authored 2020-03-19 11:51:39 +0100
18 Mar, 2020 1 commit
- updated dependancy list · 59dc03a6
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  Louis BECQUEY authored 2020-03-18 10:24:52 +0100
17 Mar, 2020 1 commit
- Mapping inference from BGSU lists · c9882ee5
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  Louis BECQUEY authored 2020-03-17 18:42:48 +0000
12 Mar, 2020 3 commits
- removed tests · 8800ab7b
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  Louis BECQUEY authored 2020-03-12 09:55:48 +0000
- Merge branch 'master' of https://github.com/persalteas/RNANet · 1775df02
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  Louis BECQUEY authored 2020-03-12 09:54:44 +0000
- Command line options · cc198903
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  Louis BECQUEY authored 2020-03-12 09:54:37 +0000
11 Mar, 2020 3 commits
- Update Readme.md · f34f5bd8
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  Louis BECQUEY authored 2020-03-11 09:42:23 +0100
- Include tests in git repo · 39010e76
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  Louis BECQUEY authored 2020-03-11 08:36:39 +0000
- align_nt_stats moved to Chain class as method · d5dc9e3a
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  Louis BECQUEY authored 2020-03-11 08:35:24 +0000
01 Mar, 2020 1 commit
- Removed non-significant peaks (avg + 1 sd threshold) · f29ffed0
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  Louis BECQUEY authored 2020-03-01 22:53:13 +0100
28 Feb, 2020 2 commits
- Updated dependencies in Readme · 76f64493
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  Louis BECQUEY authored 2020-02-28 17:12:48 +0100
- aesthetics, comments, and statistics on the produced data · 091f1528
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  Louis BECQUEY authored 2020-02-28 16:04:39 +0000
25 Feb, 2020 1 commit
- wrong line index in datapoint file when 1-hot encoding nts · a0c0c2a2
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  Louis BECQUEY authored 2020-02-25 09:44:34 +0000
20 Feb, 2020 3 commits
- Support both Intel and AMD · 8ff97fd7
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  Louis BECQUEY authored 2020-02-20 22:07:09 +0100
- names in the progress bars · 5346ef89
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  Louis BECQUEY authored 2020-02-20 21:02:00 +0000
- tqdm progress bars · 97b2613e
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  Louis BECQUEY authored 2020-02-20 17:51:27 +0000
18 Feb, 2020 1 commit
- exceptions parsed · 8d1af7ec
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  Louis BECQUEY authored 2020-02-18 08:57:25 +0000
12 Feb, 2020 1 commit
- better mapping of the gaps onto the alignments · dbba072f
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  Louis BECQUEY authored 2020-02-12 22:17:37 +0100
06 Feb, 2020 2 commits
- Correct alignment of mappings · 48c4d3ee
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  Louis BECQUEY authored 2020-02-06 17:51:55 +0100
- forgot some [] in subprocess.run for SINA · 5f7f3e62
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  Louis BECQUEY authored 2020-02-06 10:09:39 +0100
05 Feb, 2020 1 commit
- Moved to SINA alignments for rRNA LSUs · 35318812
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  Louis BECQUEY authored 2020-02-05 16:12:27 +0100
31 Jan, 2020 2 commits
- Replaçing modified nucleotides by consensus · b65082e5
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  Louis BECQUEY authored 2020-01-31 16:50:17 +0100
- cut RF02543 in pieces · d3dd32d7
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  Louis BECQUEY authored 2020-01-31 10:00:25 +0100
27 Jan, 2020 1 commit
- special treatments for RF02543 · fb9e35fc
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  Louis BECQUEY authored 2020-01-27 11:08:32 +0100
22 Jan, 2020 6 commits
- Removed restrictions to short RNA families · 3c4d8521
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  Louis BECQUEY authored 2020-01-22 21:00:32 +0000
- Ready for cloud computations · 854eaf9a
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  Louis BECQUEY authored 2020-01-22 13:49:25 +0000
- Merge branch 'master' of https://github.com/persalteas/RNAnet · bbb50777
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  Louis BECQUEY authored 2020-01-22 14:25:08 +0100
- retablish numbering relative to the RNA chain · 6dc713d1
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  Louis BECQUEY authored 2020-01-22 14:25:02 +0100
- Added IFB-core cloud machine support · 24a16a65
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  Louis BECQUEY authored 2020-01-22 13:22:28 +0000
- update dependencies list · b27a935f
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  Louis BECQUEY authored 2020-01-22 10:07:53 +0100
17 Jan, 2020 2 commits
- Merge branch 'master' of https://github.com/persalteas/RNAnet · 6215676f
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  Louis BECQUEY authored 2020-01-17 14:22:36 +0100
- SImplification using MMCIFIO · 98f9f8a6
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  Louis BECQUEY authored 2020-01-17 14:22:01 +0100