Standalone script biorseo.py

@@ -22,7 +22,8 @@ typedef unsigned int uint;
 unsigned int Fasta::load(std::list<Fasta>& data, const char* file){
 unsigned int Fasta::load(std::list<Fasta>& data, const char* file){
 
 
   std::string line, name, seq, str;
   std::string line, name, seq, str;
-  std::ifstream ifs(file);
+  std::ifstream ifs;
+  ifs.open(file, std::ios::in);
   while (std::getline(ifs, line)) {
   while (std::getline(ifs, line)) {
     if (line[0]=='>') {         // header
     if (line[0]=='>') {         // header
       if (!name.empty()) {
       if (!name.empty()) {

@@ -69,6 +69,7 @@ class NoDaemonProcess(multiprocessing.Process):
 class NoDaemonContext(type(multiprocessing.get_context())):
 class NoDaemonContext(type(multiprocessing.get_context())):
     Process = NoDaemonProcess
     Process = NoDaemonProcess
 
 
+print(multiprocessing)
 # We sub-class multiprocessing.pool.Pool instead of multiprocessing.Pool
 # We sub-class multiprocessing.pool.Pool instead of multiprocessing.Pool
 # because the latter is only a wrapper function, not a proper class.
 # because the latter is only a wrapper function, not a proper class.
 class MyPool(multiprocessing.pool.Pool):
 class MyPool(multiprocessing.pool.Pool):
@@ -76,7 +77,7 @@ class MyPool(multiprocessing.pool.Pool):
         kwargs['context'] = NoDaemonContext()
         kwargs['context'] = NoDaemonContext()
         super(MyPool, self).__init__(*args, **kwargs)
         super(MyPool, self).__init__(*args, **kwargs)
 
 
-
+exit()
 def execute_job(j):
 def execute_job(j):
 
 
     if j.checkFunc_ is not None:
     if j.checkFunc_ is not None: