Louis BECQUEY / biorseo

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Nathalie BERNARD
d690a5f1 1 parent d56ef2c7

modification des path

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Showing 1 changed file with 10 additions and 10 deletions
......@@ -25,29 +25,29 @@ def run_test(cmd, log):
rc = process.poll()
def create_command_E(name, estimator):
cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " +
#cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " +
"//mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/fasta/" +
#cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " +
cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " +
"/local/local/BiorseoNath/data/fasta/" +
name + ".fa " +
"-O results/ " +
"--contacts " +
"--patternmatch " +
"--func E --" + estimator + " -v " +
"--biorseo-dir /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo " +
"--modules-path /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/modules/ISAURE/Motifs_derniere_version ")
"--biorseo-dir /local/local/BiorseoNath " +
"--modules-path /local/local/BiorseoNath/data/modules/ISAURE/Motifs_derniere_version ")
return cmd
def create_command_F(name, estimator):
cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " +
#cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " +
"/mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/fasta/" +
#cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " +
cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " +
"/local/local/BiorseoNath/data/fasta/" +
name + ".fa " +
"-O results/ " +
"--contacts " +
"--patternmatch " +
"--func F --" + estimator + " -v " +
"--biorseo-dir /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo " +
"--modules-path /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/modules/ISAURE/Motifs_derniere_version ")
"--biorseo-dir /local/local/BiorseoNath " +
"--modules-path /local/local/BiorseoNath/data/modules/ISAURE/Motifs_derniere_version ")
return cmd
# ================== Code from Louis Beckey Benchark.py ==============================
......