Louis BECQUEY / biorseo

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Nathalie BERNARD
d690a5f1 1 parent d56ef2c7

modification des path

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Showing 1 changed file with 10 additions and 10 deletions
...@@ -25,29 +25,29 @@ def run_test(cmd, log): ...@@ -25,29 +25,29 @@ def run_test(cmd, log):
25 rc = process.poll() 25 rc = process.poll()
26 26
27 def create_command_E(name, estimator): 27 def create_command_E(name, estimator):
28 - cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " + 28 + #cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " +
29 - #cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " + 29 + cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " +
30 - "//mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/fasta/" + 30 + "/local/local/BiorseoNath/data/fasta/" +
31 name + ".fa " + 31 name + ".fa " +
32 "-O results/ " + 32 "-O results/ " +
33 "--contacts " + 33 "--contacts " +
34 "--patternmatch " + 34 "--patternmatch " +
35 "--func E --" + estimator + " -v " + 35 "--func E --" + estimator + " -v " +
36 - "--biorseo-dir /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo " + 36 + "--biorseo-dir /local/local/BiorseoNath " +
37 - "--modules-path /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/modules/ISAURE/Motifs_derniere_version ") 37 + "--modules-path /local/local/BiorseoNath/data/modules/ISAURE/Motifs_derniere_version ")
38 return cmd 38 return cmd
39 39
40 def create_command_F(name, estimator): 40 def create_command_F(name, estimator):
41 - cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " + 41 + #cmd = ("python3 /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/biorseo.py -i " +
42 - #cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " + 42 + cmd = ("python3 /local/local/BiorseoNath/biorseo.py -i " +
43 - "/mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/fasta/" + 43 + "/local/local/BiorseoNath/data/fasta/" +
44 name + ".fa " + 44 name + ".fa " +
45 "-O results/ " + 45 "-O results/ " +
46 "--contacts " + 46 "--contacts " +
47 "--patternmatch " + 47 "--patternmatch " +
48 "--func F --" + estimator + " -v " + 48 "--func F --" + estimator + " -v " +
49 - "--biorseo-dir /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo " + 49 + "--biorseo-dir /local/local/BiorseoNath " +
50 - "--modules-path /mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/modules/ISAURE/Motifs_derniere_version ") 50 + "--modules-path /local/local/BiorseoNath/data/modules/ISAURE/Motifs_derniere_version ")
51 return cmd 51 return cmd
52 52
53 # ================== Code from Louis Beckey Benchark.py ============================== 53 # ================== Code from Louis Beckey Benchark.py ==============================
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