Commits · 494f437bed51b1f2eec812d4936bba60c5368c68 · Louis BECQUEY / biorseo

01 Mar, 2019 1 commit
- Multithreaded load on Desc files (indev) · 494f437b
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  Louis BECQUEY authored 2019-03-01 11:45:23 +0100
27 Feb, 2019 4 commits
- Program Options · 0a4e941b
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  Louis BECQUEY authored 2019-02-27 16:39:47 +0100
- Verbose changes for Release version · fc998ce4
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  Louis BECQUEY authored 2019-02-27 15:45:01 +0100
- Detects wrong .desc loops and ignores them · c8c121a1
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  Louis BECQUEY authored 2019-02-27 15:26:31 +0100
- Working pattern matching of .desc files · 59e37b19
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  Louis BECQUEY authored 2019-02-27 15:13:27 +0100
26 Feb, 2019 1 commit
- pattern matching for desc motifs · e6293064
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  Louis BECQUEY authored 2019-02-26 11:08:26 +0100
22 Feb, 2019 2 commits
- Support for the old Rna3dMotif .desc format as input · d7ca4934
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  Louis BECQUEY authored 2019-02-22 18:08:25 +0100
- Classe Motif & début de loader pour RNA3dMotif · 8fb20871
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  Louis BECQUEY authored 2019-02-22 12:05:15 +0100
21 Feb, 2019 1 commit
- Re-forbid every found solution (faster and more precise) · 4bfcaf37
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  Louis BECQUEY authored 2019-02-21 11:26:56 +0100
19 Feb, 2019 2 commits
- Removed k-pareto sets (reason: too slow) · ff314aea
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  Louis BECQUEY authored 2019-02-19 18:25:50 +0100
- Faster enumeration of the superposed solutions · b6e52786
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  Louis BECQUEY authored 2019-02-19 17:26:50 +0100
18 Feb, 2019 2 commits
- Optimisations · 16f5a95a
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  Louis BECQUEY authored 2019-02-18 17:47:37 +0100
- More verbose about the searching zones · 990ba67f
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  Louis BECQUEY authored 2019-02-18 10:07:19 +0100
15 Feb, 2019 1 commit
- Real RNA-MoIP style Obj1 · e02b1d57
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  Louis BECQUEY authored 2019-02-15 12:44:04 +0100
12 Feb, 2019 3 commits
- Modified precision parameters to pass RNA Strand tests · c35fab6d
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  Louis BECQUEY authored 2019-02-12 17:32:50 +0100
- Argument correction for new K-pareto biominserter · 28fbb293
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  Louis BECQUEY authored 2019-02-12 16:22:51 +0100
- Working "k-Pareto sets" · 66fdc3b1
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  Louis BECQUEY authored 2019-02-12 16:21:16 +0100
08 Feb, 2019 1 commit
- preparing K-Pareto set implementation · 05ded4d7
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  Louis BECQUEY authored 2019-02-08 17:08:00 +0100
07 Feb, 2019 2 commits
- Added a check that min < max · e1bc5b13
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  Louis BECQUEY authored 2019-02-07 15:54:17 +0100
- New o(n²) constraint to forbid lonely basepairs · 2b66aa79
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  Louis BECQUEY authored 2019-02-07 15:30:56 +0100
05 Feb, 2019 2 commits
- merge · c48b33d0
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  Louis BECQUEY authored 2019-02-05 17:20:49 +0100
- Solved issue in ordering non crossing set sizes · aa2f1456
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  Louis BECQUEY authored 2019-02-05 17:18:20 +0100
01 Feb, 2019 2 commits
- Heuristic for pseudoknot level attribution · d143224e
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  Louis BECQUEY authored 2019-02-01 16:19:20 +0100
- Secondary Structure DBN output now supports pseudoknots · a073a9da
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  Louis BECQUEY authored 2019-02-01 11:59:43 +0100
31 Jan, 2019 4 commits
- merging · f3175da2
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  Louis BECQUEY authored 2019-01-31 17:38:47 +0100
- PK-support in Secondary Structure, indev · bfbf2ebc
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  Louis BECQUEY authored 2019-01-31 17:37:37 +0100
- Dunno · 44f044fb
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  Louis BECQUEY authored 2019-01-31 17:37:15 +0100
- Tests on RNAstrand shorts · 150f2d5f
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  Louis BECQUEY authored 2019-01-31 09:49:15 +0100
28 Jan, 2019 1 commit
- Solve 2 then 1 · 0c033378
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  Louis BECQUEY authored 2019-01-28 09:26:54 +0100
25 Jan, 2019 1 commit
- JAR3D score in objective · b7c85685
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  Louis BECQUEY authored 2019-01-25 17:55:31 +0100
24 Jan, 2019 3 commits
- integration avec RNAStrand · e19c77ed
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  Louis BECQUEY authored 2019-01-24 18:13:55 +0100
- removed useless Nupack files · 011bc764
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  Louis BECQUEY authored 2019-01-24 11:02:55 +0100
- Updated documentation · e2aa1dcc
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  Louis BECQUEY authored 2019-01-24 10:58:16 +0100
23 Jan, 2019 1 commit
- Nettoyage + Update Doc · 5f6cb56f
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  Louis BECQUEY authored 2019-01-23 11:26:40 +0100
22 Jan, 2019 2 commits
- Everything works · a5f7e06c
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  Louis BECQUEY authored 2019-01-22 13:51:51 +0100
- Working but forbid_solution · c06db5fc
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  Louis BECQUEY authored 2019-01-22 10:26:19 +0100
10 Jan, 2019 1 commit
- Using external Nupack · 3a5be256
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  Louis BECQUEY authored 2019-01-10 13:38:16 +0100
14 Dec, 2018 1 commit
- Output changes · d7291458
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  Louis BECQUEY authored 2018-12-14 10:34:06 +0100
11 Dec, 2018 2 commits
- O(N⁴) posterior try · 5958dee0
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  Louis BECQUEY authored 2018-12-11 19:36:51 +0100
- Compare O(N³) and O(N⁴) · 21d41bce
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  Louis BECQUEY authored 2018-12-11 17:56:14 +0100