Ludovic PLATON / IRSOM

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Ludovic PLATON
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...@@ -63,12 +63,5 @@ Default usage: ...@@ -63,12 +63,5 @@ Default usage:
63 python scripts/predict.py --featurer=${path_IRSOM}/bin/featurer --file=fasta_file.fasta --model=${path_IRSOM}/model/species/ --output=output_dir_of_result 63 python scripts/predict.py --featurer=${path_IRSOM}/bin/featurer --file=fasta_file.fasta --model=${path_IRSOM}/model/species/ --output=output_dir_of_result
64 ``` 64 ```
65 65
66 -The rejection option can be use with the parameter --rejection.
67 -For example, to predict with a rejection treshold of 0.8, we run the command:
68 -
69 -``` bash
70 -python scripts/predict.py --featurer=${path_IRSOM}/bin/featurer --file=fasta_file.fasta --model=${path_IRSOM}/model/species/ --output=output_dir_of_result --rejection=0.8
71 -```
72 -
73 As for the train script, the features are removed by default. 66 As for the train script, the features are removed by default.
74 To keep them, use the parameter --keep\_features. 67 To keep them, use the parameter --keep\_features.
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