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Ludovic PLATON
/
IRSOM
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Authored by
root
2018-02-01 16:38:31 +0100
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9e685ad760563c4133997caf52e272c253ae179a
9e685ad7
2 parents
0e7a676b
bf7323da
Merge branch 'master' of
https://forge.ibisc.univ-evry.fr/lplaton/IRSOM
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README.md
README.md
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@@ -63,12 +63,5 @@ Default usage:
python scripts/predict.py --featurer
=
${
path_IRSOM
}
/bin/featurer --file
=
fasta_file.fasta --model
=
${
path_IRSOM
}
/model/species/ --output
=
output_dir_of_result
```
The rejection option can be use with the parameter --rejection.
For example, to predict with a rejection treshold of 0.8, we run the command:
```
bash
python scripts/predict.py --featurer
=
${
path_IRSOM
}
/bin/featurer --file
=
fasta_file.fasta --model
=
${
path_IRSOM
}
/model/species/ --output
=
output_dir_of_result --rejection
=
0.8
```
As for the train script, the features are removed by default.
To keep them, use the parameter --keep
\_
features.
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