Merge branch 'master' of https://forge.ibisc.univ-evry.fr/lplaton/IRSOM
Showing
1 changed file
with
0 additions
and
7 deletions
... | @@ -63,12 +63,5 @@ Default usage: | ... | @@ -63,12 +63,5 @@ Default usage: |
63 | python scripts/predict.py --featurer=${path_IRSOM}/bin/featurer --file=fasta_file.fasta --model=${path_IRSOM}/model/species/ --output=output_dir_of_result | 63 | python scripts/predict.py --featurer=${path_IRSOM}/bin/featurer --file=fasta_file.fasta --model=${path_IRSOM}/model/species/ --output=output_dir_of_result |
64 | ``` | 64 | ``` |
65 | 65 | ||
66 | -The rejection option can be use with the parameter --rejection. | ||
67 | -For example, to predict with a rejection treshold of 0.8, we run the command: | ||
68 | - | ||
69 | -``` bash | ||
70 | -python scripts/predict.py --featurer=${path_IRSOM}/bin/featurer --file=fasta_file.fasta --model=${path_IRSOM}/model/species/ --output=output_dir_of_result --rejection=0.8 | ||
71 | -``` | ||
72 | - | ||
73 | As for the train script, the features are removed by default. | 66 | As for the train script, the features are removed by default. |
74 | To keep them, use the parameter --keep\_features. | 67 | To keep them, use the parameter --keep\_features. | ... | ... |
-
Please register or login to post a comment