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A C++ software interface to RNA module databases, and a biobjective algorithm to include known modules in sequences to assist the energy criteria in predicting secondary structures.

This repo holds the scripts for the data generation pipeline with diffusion models. Generation is performed on landmark genes and reconstruction on target genes.

Project code of GraphGONet (paper published in Bioinformatics)

Implementation of BioHAN, a knowledge-based heterogeneous graph neural network for precision medicine on transcriptomic data