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Implementation of BioHAN, a knowledge-based heterogeneous graph neural network for precision medicine on transcriptomic data

Cours "langage de script "en L3 informatique de l'université d'Évry / Paris-Saclay

Project code of GraphGONet (paper published in Bioinformatics)

This repo holds the scripts for the data generation pipeline with diffusion models. Generation is performed on landmark genes and reconstruction on target genes.

SNAKES is the Net Algebra Kit for Editors and Simulators

https://www.ibisc.univ-evry.fr/~fpommereau/SNAKES/

A C++ software interface to RNA module databases, and a biobjective algorithm to include known modules in sequences to assist the energy criteria in predicting secondary structures.

Multiscale dataset of non-coding RNA structures, including sequences, secondary structures, non-canonical interactions, 3D geometrical descriptors, and sequence homology.