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Project code of GraphGONet (paper published in Bioinformatics)

This repo holds the scripts for the data generation pipeline with diffusion models. Generation is performed on landmark genes and reconstruction on target genes.

C Compiler for TTC

Multiscale dataset of non-coding RNA structures, including sequences, secondary structures, non-canonical interactions, 3D geometrical descriptors, and sequence homology.

SNAKES is the Net Algebra Kit for Editors and Simulators

https://www.ibisc.univ-evry.fr/~fpommereau/SNAKES/

Animated code & data structures with LaTeX/beamer

The Temporal Logic Wizard

A C++ software interface to RNA module databases, and a biobjective algorithm to include known modules in sequences to assist the energy criteria in predicting secondary structures.

A virtual machine with an extremely simplified architecture for teaching purpose